Publications 2023

Journal articles

• Studier-Fischer, A., Seidlitz, S., Sellner, J., Bressan, M., Özdemir, B., Ayala, L., ... & Nickel, F. (2023). HeiPorSPECTRAL-the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs. Scientific Data, 10(1), 414. DOI: 10.1038/s41597-023-02334-7

• Nickel, F., Studier-Fischer, A., Özdemir, B., Odenthal, J., Müller, L. R., Knoedler, S., ... Seidlitz, S., Maier-Hein, L. & Müller-Stich, B. P. (2023). Optimization of anastomotic technique and gastric conduit perfusion with hyperspectral imaging and machine learning in an experimental model for minimally invasive esophagectomy. European Journal of Surgical Oncology. DOI: 10.1016/j.ejso.2023.04.007

• Ayala, L., Adler, T. J., Seidlitz, S., Wirkert, S., Engels, C., Seitel, A., Sellner, J., ... & Maier-Hein, L. (2023). Spectral imaging enables contrast agent–free real-time ischemia monitoring in laparoscopic surgery. Science Advances, 9(10), eadd6778. DOI: 10.1126/sciadv.add6778

• Studier-Fischer, A., Schwab, F. M., Rees, M., Seidlitz, S., Sellner, J., Özdemir, B., ... & Nickel, F. (2023). ICG-augmented hyperspectral imaging for visualization of intestinal perfusion compared to conventional ICG fluorescence imaging-An experimental study. International Journal of Surgery, 10-1097.

• Rix, T., Dreher, K. K., Nölke, J. H., Schellenberg, M., Tizabi, M. D., Seitel, A., & Maier-Hein, L. (2023). Efficient Photoacoustic Image Synthesis with Deep Learning. Sensors, 23(16), 7085. DOI: 10.3390/s23167085

• Nwoye, C. I., …, Schellenberg, M., …, Godau, P., …, Padoy, N. (2023). CholecTriplet2022: Show me a tool and tell me the triplet — An endoscopic vision challenge for surgical action triplet detection. Medical Image Analysis, 89, 102888. DOI: 10.1016/j.media.2023.102888

• Münch, J. M., Sobol, M. S., Brors, B., & Kaster, A. K. (2023). Single-cell transcriptomics and data analyses for prokaryotes-Past, present and future concepts. Advances in applied microbiology, 123, 1–39. DOI: 10.1016/bs.aambs.2023.04.002

• Koi, L. & Bitto, V., Weise, C. et al. (2023). Prognostic biomarkers for the response to the radiosensitizer nimorazole combined with RCTx: a pre-clinical trial in HNSCC xenografts. Journal of Translational Medicine, 21, 576. DOI: 10.1186/s12967-023-04439-2

• Zaunseder, E., Mütze, U., Garbade, S. F., Haupt, S., Feyh, P., Hoffmann, G. F., Heuveline, V., & Kölker, S. (2023). Machine Learning Methods Improve Specificity in Newborn Screening for Isovaleric Aciduria. Metabolites, 13(2), 304. DOI: 10.3390/metabo13020304

• Deininger, L., Jung-Klawitter, S., Mikut, R., Richter, P., Fischer, M., Karimian-Jazi, K., Breckwoldt, M. O., Bendszus, M., Heiland, S., Kleesiek, J., Opladen, T., Hübschmann, O. K., Hübschmann, D., & Schwarz, D. (2023). An AI-based segmentation and analysis pipeline for high-field MR monitoring of cerebral organoids. Scientific Reports, 13(1). DOI: 10.1038/s41598-023-48343-7

• Scheikl, P. M., Gyenes, B., Younis, R., Haas, C., Neumann, G., Wagner, M., & Mathis-Ullrich, F. (2023). LapGym - An Open Source Framework for Reinforcement Learning in Robot-Assisted Laparoscopic Surgery. Journal of Machine Learning Research, 24, 1–42.

• Ross, T., Bruno, P., Reinke, A., Wiesenfarth, M., Koeppel, L., Full, P.M., Pekdemir, B., Godau, P., Trofimova, D., Isensee, F., Adler, T.J., Tran, T.N., Moccia, S., Calimeri, F., Müller-Stich, B.P., Kopp-Schneider, A., & Maier-Hein, L. (2023). Beyond rankings: Learning (more) from algorithm validation. Medical Image Analysis, 86, 102765. DOI: 10.1016/j.media.2023.102765

• Bauer, C. J., Teske, H., Walter, A., Hoegen, P., Adeberg, S., Debus, J., ... & Giske, K. (2023). Biofidelic image registration for head and neck region utilizing an in-silico articulated skeleton as a transformation model. Physics in Medicine & Biology, 68(9), 095006. DOI: 10.1088/1361-6560/acc7f1

• Herold, J., Behle, E., Rosenbauer, J., Ferruzzi, J., & Schug, A. (2023). Development of a scoring function for comparing simulated and experimental tumor spheroids. PLOS Computational Biology, 19(3), e1010471. DOI: 10.1371/journal.pcbi.1010471

• Sellner, J. & Seidlitz, S., Studier-Fischer, A., Motta, A., Özdemir, B., Müller-Stich, B. P., ... & Maier-Hein, L. (2023). Semantic segmentation of surgical hyperspectral images under geometric domain shifts. In Medical Image Computing and Computer Assisted Intervention − MICCAI 2023: 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings. Springer International Publishing. https://doi.org/10.48550/arXiv.2303.10972

• Marinov, Z., Reiß, S., Kersting, D., Kleesiek, J., & Stiefelhagen, R. (2023). Mirror U-Net: Marrying Multimodal Fission with Multi-Task Learning for Semantic Segmentation in Medical Imaging. Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV) Workshops, 2023, pp. 2283-2293, Paris, France. https://doi.org/10.48550/arXiv.2303.07126

• Marinov, Z., Stiefelhagen, R., & Kleesiek, J. (2023, October). Guiding the Guidance: A Comparative Analysis of User Guidance Signals for Interactive Segmentation of Volumetric Images. In Medical Image Computing and Computer Assisted Intervention − MICCAI 2023: 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings. Springer International Publishing. https://doi.org/10.48550/arXiv.2303.06942

• Godau, P., Kalinowski, P., Christodoulou, E., Reinke, A., Tizabi, M., Ferrer, L., ... & Maier-Hein, L. (2023, October). Deployment of Image Analysis Algorithms Under Prevalence Shifts. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 389-399). Cham: Springer Nature Switzerland. https://doi.org/10.48550/arXiv.2303.12540

• Piochowiak, M., Dachsbacher, C. (2023). Fast Compressed Segmentation Volumes for Scientific Visualization. In IEEE Transactions on Visualization and Computer Graphics, Proc. IEEE Vis, Melbourne, Australia, October 22-27. https://doi.org/10.48550/arXiv.2308.16619

Conferences und Proceedings

• Dreher, K. K., Ayala, L., Schellenberg, M., Hübner, M., Nölke, J. H., Adler, T. J., Seidlitz, S., Sellner, J., ... & Maier-Hein, L. (2023). Unsupervised domain transfer with conditional invertible neural networks. In Medical Image Computing and Computer Assisted Intervention − MICCAI 2023: 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings. Springer International Publishing. https://doi.org/10.48550/arXiv.2303.10191

• Hallitschke, V. J., Schlumberger, T., Kataliakos, P., Marinov, Z., Kim, M., Heiliger, L., Seibold, C., Kleesiek, J., & Stiefelhagen, R. (2023, September). Multimodal Interactive Lung Lesion Segmentation: A Framework for Annotating PET/CT Images Based on Physiological and Anatomical Cues. 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), Cartagena, Colombia. https://doi.org/10.48550/arXiv.2301.09914

• Yamlahi, A., Tran, T. N., Godau, P., Schellenberg, M., Michael, D., Smidt, F. H., ... & Maier-Hein, L. (2023, October). Self-distillation for surgical action recognition. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 637-646). Cham: Springer Nature Switzerland. https://doi.org/10.48550/arXiv.2303.12915

• Holzwarth, N., Staus, M., Günther, J., Calderazzo, S., Schellenberg, M., Lang, W., ... & Seitel, A. (2023, March). Clinical tattoo tomography. In Photons Plus Ultrasound: Imaging and Sensing 2023 (p. PC1237930). SPIE.

• Holzwarth, N., Schellenberg, M., Gröhl, J., Dreher, K., Nölke, J. H., Seitel, A., ... & Maier-Hein, L. (2023, June). Tattoo-Tomographie: Freihand-3D-Photoakustik und multimodale Bildfusion. In BVM Workshop (pp. 114-114). Wiesbaden: Springer Fachmedien Wiesbaden.

• Zaunseder, E., Mütze, U., Garbade, S. F., Haupt, F., Kölker, S. & Heuveline, V. (2023). Deep learning and explainable artificial intelligence for improving specificity and detecting metabolic patterns in newborn screening. In Proceedings of the 2023 IEEE Symposium Series on Computational Intelligence, Mexico City (Mexico), 5-8th 2023.

• Hu, S., Usta, A., Schmidt-Kraepelin, M., Warsinsky, S., Thiebes, S., & Sunyaev, A. (2023). Be Mindful of User Preferences: An Explorative Study on Game Design Elements in Mindfulness Applications. Proceedings of the 56th Hawaii International Conference on System Sciences, Jan. 03-06, Maui, HI, USA.

• Leiser, F., Warsinsky, S., Daum, M., Schmidt-Kraepelin, M., Thiebes, S., Wagner, M., & Sunyaev, A. (2023). Understanding the Role of Expert Intuition in Medical Image Annotation: A Cognitive Task Analysis Approach. Proceedings of the 56th Hawaii International Conference on System Sciences, Jan. 03-06, Maui, HI, USA.

• Leiser, F., Warsinsky, S., Schmidt-Kraepelin, M., Thiebes, S. & Sunyaev, A. (2023). How Experts Rely on Intuition in Medical Image Annotation – A Study Proposal. Proceedings NeuroIS Retreat 2023, May 30 - Jun. 01, Vienna, Austria.

• Schmidt-Kraepelin, M., Thiebes, S., Warsinsky, S. L., Petter, S., & Sunyaev, A. (2023, April). Narrative Transportation in Gamified Information Systems: The Role of Narrative-Task Congruence. In Extended Abstracts of the 2023 CHI Conference on Human Factors in Computing Systems, Hamburg, Germany.

• Henrich, P., Gyenes, B., Scheikl, P. M., Neumann, G., & Mathis-Ullrich, F. (2023). Registered and Segmented Deformable Object Reconstruction from a Single View Point Cloud. Winter Conference on Applications of Computer Vision 2024, Waikoloa, Hawaii.

• Eisenmann, M., Reinke, A., Weru, V., Tizabi, M.D., … Godau, P., …, Maier-Hein, K.H., Jager, P.F., Kopp-Schneider, A., & Maier-Hein, L. (2023). Why is the Winner the Best? 2023 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 19955-19966.

• Kiani, V,  Jäkel, H, Fröning, H. (2024). CLAIRE-ROP: Rapid Partitioning-based Deformable Image Registration on Multi-GPU Accelerator. ICMHI 2024, Yokohama, Japan.

• Peretzke, R., Maier-Hein, K. H., Bohn, J., Kirchhoff, Y., Roy, S., Oberli-Palma, S., ... & Neher, P. (2023, October). atTRACTive: Semi-automatic white matter tract segmentation using active learning. In International Conference on Medical Image Computing and Computer-Assisted Intervention (pp. 237-246). Cham: Springer Nature Switzerland.